Supermicro 5039MS-H12TRF 3U MicroCloud 12xNodes 1S Xeon E3-1200 Celeron Pentium 64GB 2×3.5/4×2.5/2xNVMe 2xGbE Hyperconverged High Density Server


Out of stock

SKU: SYS-5039MS-H12TRF Category:

The Supermicro SuperServer SYS-5039MS-H12TRF is ideal and customizable for your Digital Transformation Applications : Web Server, Mail Servers, Storage and Security Appliances, Network Infrastructure, Enterprise Software, Video Processing, Big Data, Hyperconverged Appliances, Internet of Things (IoT), In-Memory Analytics, Machine Learning (ML), Artificial Intelligence (AI) and general Data Center Virtualization & Private Cloud or Hyperscale Infrastructure Applications.

Key features

Total 12 UP Nodes with each node featuring :

  • Single socket H4 (LGA 1151) supports Intel® Xeon® processor E3-1200 v6/v5, Intel® 7th/6th Gen. Core™ i3 series, Intel® Celeron® and Intel® Pentium®
  • 2x 3.5″ SATA3 or 4x 2.5″ SATA3 or 2x 2.5″ NVMe 2x 2.5″ SATA3 or 2x 2.5″ NVMe 1x 3.5″ SATA3
  • Up to 64GB DDR4 VLP ECC UDIMM 2400MHz support in 4 slots
  • 2 GbE LAN ports via Intel i350
  • 1 Centralized IPMI management port
  • 2 USB 2.0, 1 VGA, 1 COM port, (with KVM dongle)
  • 1 USB 3.0 (Type A), 1 SATA DOM
  • 4 heavy duty 9cm hot-swap fans with optimal cooling zone (per system)
  • 2000W Redundant power supplies Titanium Level Certified (per system)
  • Product Type: Server Barebone (chassis, motherboard, power supply)
  • Manufacturer Part Number: SYS-5039MS-H12TRF

For complete system configuration with CPU, memory, hard drive etc, please select a Dihuni OptiReady model below (if listed) or use ‘Request Quote’ or contact us by email or phone.


Supermicro Servers Featuring Intel Xeon® E3-1200 Processor Series

The latest Intel® Xeon® processor E3-1200 v5 product family-based platform is a smart investment for a wide range of business needs and sizes. In addition to gains in CPU performance, CPU performance per watt, and graphics performance, Intel Xeon processor E3-1200 v5 product family-based platforms offer fast access to data, protect the data’s integrity, and have proven reliability for a range of business needs. Explore the expanded product line to discover new options for data center graphics, in addition to traditional entry-level server and workstation applications. Built for Professionals Step up to the performance and visuals demanded by professional-grade CAD or media and entertainment applications. With Intel Xeon processor E3-1200 v5 product family-based workstations, you’ll find the capabilities that get designers, engineers, and animators started. Accelerate exploration of complex data with the graphics performance of Intel® HD Graphics P530. Improve the integrity and uptime of design data with ECC memory technology. And with Intel® vPro™ technology, you can make sure your workstations are as secure and manageable as any PC in your organization’s fleet.

“Supermicro offers the highest density, performance per watt, and broadest range of computing solutions optimized for Intel’s latest Xeon E3-1200 v5 and Xeon D-1500 processors. With our new generation UP systems, customers can quickly deploy scalable, performance optimized solutions that are exactly the best fit for their applications. Combined with Supermicro’s architecture innovations and energy efficient technologies, our Green Computing solutions help customers obtain maximum performance per watt, per dollar, per square foot to lower their overall TCO.”  

Charles Liang, President and CEO of Supermicro

Server Systems Management

Supermicro Server Manager (SSM) provides capabilities to monitor the health of server components including memory, hard drives and RAID controllers. It enables the datacenter administrator to monitor and manage power usage across all Supermicro servers allowing users to maximize their CPU payload while mitigating the risk of tripped circuit. Firmware upgrades on Supermicro servers became easier now with a couple of clicks. Administrators can now mount an ISO image on multiple servers and reboot the servers with those images. The tool also provides pre-defined reports and many more features that will make managing Supermicro servers simpler. Download the SSM_brochure for more info or download Supermicro SuperDoctor® device monitoring and management software.

Technical Specifications

  • Mfr Part Number: SYS-5039MS-H12TRF
  • Motherboard: MBD-X11SSE-F
  • Processor Per Node: LGA1151
    • Supports Intel Xeon E3-1200 v5 Series Processors
    • Supports 6th Generation Intel Core i3/ Pentium/ Celeron Processors
    • Supports up to 80W TDP
  • Chipset Per Node: Intel C236
  • Memory Per Node: 4x 288pin DDR4-2133 DIMM Slots, VLP, ECC, Unbuffered, Max Capacity of 64GB
  • SATA Per Node: 2x SATA3 Ports
  • Video Per Node: Aspeed AST2400 BMC Graphics
  • LAN Per Node: 2x Intel i350 Gigabit Ethernet Controllers
  • Drive Bays Per Node: 2x 3.5″/2.5″ SATA3 HDDs per node; up to 24x 3.5″/2.5″ drives total or 2x 2.5″ NVMe + 2x 2.5″ SATA3 drives per node; up to 48x 2.5″ drives total
  • Ports per Node: 1x USB 3.0 Port (Type A), 2x USB 2.0 Ports, 1x VGA Port, 2x RJ45 LAN Ports
  • Form Factor: 3U Rackmount
  • Power Supply: 2000W 80 PLUS Titanium Level (96%) High-efficiency Redundant Power Supplies
  • System Cooling: 4x 9cm Heavy Duty Fans w/ Optimal Cooling Zone
  • Color: Black
  • Dimensions (WxDxH): 17.50 x 29.50 x 5.21 inch / 444.5 x 749.3 x 132.5 mm
  • Weight: 95.0 lbs / 43.09 kg
  • RoHS Compliant

Additional information

Weight 95 lbs
Dimensions 29.5 × 17.5 × 5.21 in






Product Type

64-bit Processing


Graphics Controller


Number of SATA


Number of Total Memory


Number of Processors


Product Family

Total Number of USB


Number of USB 3.0


Memory Standard




Memory Technology


Processor Socket

Socket H4 LGA-1151

Rack Height



Form Factor


Processor Supported


Controller Type

Serial ATA/600

Maximum Memory

64 GB


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